IL_8RD8_161

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCAG*CGAAUC

Length

10 nucleotides

Bulged bases

8RD8|1|iN|A|1302, 8RD8|1|iN|A|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_161 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1529

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8RD8|1|iN|G|1300
8RD8|1|iN|C|1301
8RD8|1|iN|A|1302
8RD8|1|iN|G|1303
*
8RD8|1|iN|C|1322
8RD8|1|iN|G|1323
8RD8|1|iN|A|1324
8RD8|1|iN|A|1325
8RD8|1|iN|U|1326
8RD8|1|iN|C|1327

Current chains

Chain iN

16S rRNA

Nearby chains

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14

Chain JY

Small ribosomal subunit protein uS10