IL_8RD8_163

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_163 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1179

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8RD8|1|iN|C|1348
8RD8|1|iN|G|1349
8RD8|1|iN|G|1350
8RD8|1|iN|A|1351
8RD8|1|iN|U|1352
8RD8|1|iN|U|1353
*
8RD8|1|iN|A|1374
8RD8|1|iN|U|1375
8RD8|1|iN|G|1376
8RD8|1|iN|A|1377
8RD8|1|iN|A|1378
8RD8|1|iN|G|1379

Current chains

Chain iN

16S rRNA

Nearby chains

Chain MM

Small ribosomal subunit protein uS13