IL_8RD8_167
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 8RD8|1|iN|A|1538
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_167 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3157
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8RD8|1|iN|C|1452
8RD8|1|iN|A|1453
8RD8|1|iN|C|1454
*
8RD8|1|iN|G|1536
8RD8|1|iN|A|1537
8RD8|1|iN|A|1538
8RD8|1|iN|G|1539
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain D
- 30S ribosomal protein S30
- Chain L6
- Small ribosomal subunit protein uS12
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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