IL_8RD8_176
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_176 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0846
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8RD8|1|iN|A|717
8RD8|1|iN|G|718
8RD8|1|iN|A|719
8RD8|1|iN|A|720
8RD8|1|iN|U|721
*
8RD8|1|iN|G|757
8RD8|1|iN|G|758
8RD8|1|iN|A|759
8RD8|1|iN|A|760
8RD8|1|iN|U|761
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain FG
- Small ribosomal subunit protein bS6
- Chain KU
- Small ribosomal subunit protein uS11
- Chain NV
- Small ribosomal subunit protein bS21
- Chain R3
- Small ribosomal subunit protein bS18
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