IL_8RDV_001

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8RDV|1|D8|C|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_001 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.2094

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8RDV|1|D8|C|15
8RDV|1|D8|A|16
*
8RDV|1|D8|U|63
8RDV|1|D8|C|64
8RDV|1|D8|G|65

Current chains

Chain D8

5S rRNA

Nearby chains

Chain Z2

Large subunit ribosomal RNA; LSU rRNA