IL_8RDV_005
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_005 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0686
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RDV|1|D8|C|69
8RDV|1|D8|A|70
8RDV|1|D8|A|71
8RDV|1|D8|U|72
8RDV|1|D8|G|73
8RDV|1|D8|G|74
8RDV|1|D8|U|75
8RDV|1|D8|A|76
8RDV|1|D8|G|77
*
8RDV|1|D8|U|94
8RDV|1|D8|G|95
8RDV|1|D8|A|96
8RDV|1|D8|G|97
8RDV|1|D8|A|98
8RDV|1|D8|G|99
8RDV|1|D8|U|100
8RDV|1|D8|A|101
8RDV|1|D8|G|102
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain UC
- Large ribosomal subunit protein bL25
- Chain YW
- Large ribosomal subunit protein uL30
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: