IL_8RDV_006
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_006 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0615
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RDV|1|Z2|G|31
8RDV|1|Z2|U|32
8RDV|1|Z2|G|33
8RDV|1|Z2|G|34
8RDV|1|Z2|A|35
8RDV|1|Z2|U|36
8RDV|1|Z2|G|37
*
8RDV|1|Z2|C|493
8RDV|1|Z2|U|494
8RDV|1|Z2|G|495
8RDV|1|Z2|A|496
8RDV|1|Z2|A|497
8RDV|1|Z2|A|498
8RDV|1|Z2|C|499
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain PO
- Large ribosomal subunit protein bL20
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: