IL_8RDV_009
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGAG*CUGUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_009 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.0968
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
8RDV|1|Z2|G|88
8RDV|1|Z2|G|89
8RDV|1|Z2|G|90
8RDV|1|Z2|A|91
8RDV|1|Z2|G|92
*
8RDV|1|Z2|C|104
8RDV|1|Z2|U|105
8RDV|1|Z2|G|106
8RDV|1|Z2|U|107
8RDV|1|Z2|G|108
8RDV|1|Z2|A|109
8RDV|1|Z2|U|110
8RDV|1|Z2|C|111
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain TI
- Large ribosomal subunit protein uL24
- Chain XE
- Large ribosomal subunit protein uL29
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