IL_8RDV_011
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_011 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0821
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8RDV|1|Z2|G|185
8RDV|1|Z2|G|186
8RDV|1|Z2|A|187
8RDV|1|Z2|A|188
8RDV|1|Z2|G|189
8RDV|1|Z2|U|190
8RDV|1|Z2|G|191
*
8RDV|1|Z2|C|198
8RDV|1|Z2|U|199
8RDV|1|Z2|C|200
8RDV|1|Z2|A|201
8RDV|1|Z2|G|202
8RDV|1|Z2|U|203
8RDV|1|Z2|A|204
8RDV|1|Z2|C|205
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain WD
- Large ribosomal subunit protein bL28
- Chain dh
- Large ribosomal subunit protein bL35
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