IL_8RDV_020

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_020 not in the Motif Atlas

Geometric match to IL_7RQB_017

Geometric discrepancy: 0.0492

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

8RDV|1|Z2|C|657
8RDV|1|Z2|C|658
8RDV|1|Z2|G|659
*
8RDV|1|Z2|C|791
8RDV|1|Z2|U|792
8RDV|1|Z2|G|793

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain Kd

Large ribosomal subunit protein uL15