IL_8RDV_046

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8RDV|1|Z2|A|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_046 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.0948

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|G|1071
8RDV|1|Z2|A|1072
8RDV|1|Z2|A|1073
8RDV|1|Z2|A|1074
*
8RDV|1|Z2|U|1085
8RDV|1|Z2|C|1086

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain ep

Large ribosomal subunit protein bL36