IL_8RDV_047

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAA,UUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_047 not in the Motif Atlas

Homologous match to IL_4WF9_043

Geometric discrepancy: 0.5423

The information below is about IL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|A|1154
8RDV|1|Z2|A|1155
8RDV|1|Z2|A|1156
*
8RDV|1|Z2|U|1162
8RDV|1|Z2|U|1163
8RDV|1|Z2|U|1164

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Qb

Large ribosomal subunit protein bL21