IL_8RDV_055

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_055 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1451

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8RDV|1|Z2|C|1341
8RDV|1|Z2|G|1342
8RDV|1|Z2|A|1343
8RDV|1|Z2|G|1344
8RDV|1|Z2|G|1345
*
8RDV|1|Z2|C|1354
8RDV|1|Z2|G|1355
8RDV|1|Z2|U|1356
8RDV|1|Z2|A|1357
8RDV|1|Z2|G|1358

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Cl

Large ribosomal subunit protein uL2