IL_8RDV_061

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUGUAG*UGAGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_061 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3567

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8RDV|1|Z2|A|1457
8RDV|1|Z2|U|1458
8RDV|1|Z2|G|1459
8RDV|1|Z2|U|1460
8RDV|1|Z2|A|1461
8RDV|1|Z2|G|1462
*
8RDV|1|Z2|U|1499
8RDV|1|Z2|G|1500
8RDV|1|Z2|A|1501
8RDV|1|Z2|G|1502
8RDV|1|Z2|A|1503
8RDV|1|Z2|U|1504

Current chains

Chain Z2

23S rRNA

Nearby chains