IL_8RDV_067

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8RDV|1|Z2|G|1978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_067 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0454

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|A|1657
8RDV|1|Z2|C|1658
8RDV|1|Z2|U|1659
8RDV|1|Z2|A|1660
8RDV|1|Z2|G|1661
8RDV|1|Z2|G|1662
*
8RDV|1|Z2|C|1976
8RDV|1|Z2|U|1977
8RDV|1|Z2|G|1978
8RDV|1|Z2|U|1979

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain Je

Large ribosomal subunit protein uL14