IL_8RDV_068

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8RDV|1|Z2|G|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_068 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0764

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|C|1674
8RDV|1|Z2|G|1675
8RDV|1|Z2|U|1676
8RDV|1|Z2|A|1677
8RDV|1|Z2|A|1678
8RDV|1|Z2|C|1679
*
8RDV|1|Z2|G|1684
8RDV|1|Z2|G|1685
8RDV|1|Z2|A|1686
8RDV|1|Z2|G|1687
8RDV|1|Z2|A|1688
8RDV|1|Z2|A|1689
8RDV|1|Z2|G|1690

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA