IL_8RDV_074

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8RDV|1|Z2|A|1885, 8RDV|1|Z2|A|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_074 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.0728

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8RDV|1|Z2|U|1827
8RDV|1|Z2|G|1828
*
8RDV|1|Z2|U|1884
8RDV|1|Z2|A|1885
8RDV|1|Z2|A|1886
8RDV|1|Z2|A|1887

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA