IL_8RDV_080

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8RDV|1|Z2|C|2041, 8RDV|1|Z2|U|2596, 8RDV|1|Z2|A|2597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_080 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0945

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|A|2040
8RDV|1|Z2|C|2041
8RDV|1|Z2|G|2042
*
8RDV|1|Z2|C|2595
8RDV|1|Z2|U|2596
8RDV|1|Z2|A|2597
8RDV|1|Z2|U|2598

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain RF

Large ribosomal subunit protein uL22

Chain aA

Large ribosomal subunit protein bL32