IL_8RDV_087

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_087 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0608

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8RDV|1|Z2|C|2333
8RDV|1|Z2|G|2334
8RDV|1|Z2|A|2335
8RDV|1|Z2|G|2336
*
8RDV|1|Z2|C|2347
8RDV|1|Z2|G|2348
8RDV|1|Z2|A|2349
8RDV|1|Z2|G|2350

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Nc

Large ribosomal subunit protein uL18

Chain VH

Large ribosomal subunit protein bL27

Chain dh

Large ribosomal subunit protein bL35