IL_8RDV_093
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_093 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1071
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8RDV|1|Z2|C|2449
8RDV|1|Z2|C|2450
8RDV|1|Z2|A|2451
8RDV|1|Z2|A|2452
8RDV|1|Z2|G|2453
*
8RDV|1|Z2|C|2463
8RDV|1|Z2|G|2464
8RDV|1|Z2|A|2465
8RDV|1|Z2|C|2466
8RDV|1|Z2|G|2467
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain ep
- Large ribosomal subunit protein bL36
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