IL_8RDV_105
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8RDV|1|Z2|A|2748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_105 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.0693
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|Z2|G|2720
8RDV|1|Z2|A|2721
8RDV|1|Z2|U|2722
8RDV|1|Z2|A|2723
8RDV|1|Z2|A|2724
8RDV|1|Z2|C|2725
*
8RDV|1|Z2|G|2745
8RDV|1|Z2|G|2746
8RDV|1|Z2|A|2747
8RDV|1|Z2|A|2748
8RDV|1|Z2|G|2749
8RDV|1|Z2|C|2750
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain GR
- Large ribosomal subunit protein uL6
- Chain IX
- Large ribosomal subunit protein uL13
- Chain ep
- Large ribosomal subunit protein bL36
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