IL_8RDV_106

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAAG*CGUUUG

Length

12 nucleotides

Bulged bases

8RDV|1|Z2|U|2773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|C|2772
8RDV|1|Z2|U|2773
8RDV|1|Z2|A|2774
8RDV|1|Z2|A|2775
8RDV|1|Z2|A|2776
8RDV|1|Z2|G|2777
*
8RDV|1|Z2|C|2855
8RDV|1|Z2|G|2856
8RDV|1|Z2|U|2857
8RDV|1|Z2|U|2858
8RDV|1|Z2|U|2859
8RDV|1|Z2|G|2860

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain RF

Large ribosomal subunit protein uL22