IL_8RDV_108

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_108 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0813

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8RDV|1|Z2|G|2809
8RDV|1|Z2|G|2810
8RDV|1|Z2|U|2811
8RDV|1|Z2|G|2812
*
8RDV|1|Z2|C|2836
8RDV|1|Z2|U|2837
8RDV|1|Z2|A|2838
8RDV|1|Z2|A|2839
8RDV|1|Z2|C|2840

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain MB

Large ribosomal subunit protein bL17

Chain Oi

Large ribosomal subunit protein bL19