IL_8RDV_109

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGAAG*UGUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_109 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1956

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

8RDV|1|Z2|U|2813
8RDV|1|Z2|G|2814
8RDV|1|Z2|G|2815
8RDV|1|Z2|A|2816
8RDV|1|Z2|A|2817
8RDV|1|Z2|G|2818
*
8RDV|1|Z2|U|2831
8RDV|1|Z2|G|2832
8RDV|1|Z2|U|2833
8RDV|1|Z2|A|2834
8RDV|1|Z2|G|2835

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain MB

Large ribosomal subunit protein bL17

Chain Oi

Large ribosomal subunit protein bL19