IL_8RDV_128

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8RDV|1|iN|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_128 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1267

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|U|452
8RDV|1|iN|G|453
8RDV|1|iN|A|454
8RDV|1|iN|A|455
8RDV|1|iN|G|456
8RDV|1|iN|A|457
8RDV|1|iN|A|458
8RDV|1|iN|G|459
*
8RDV|1|iN|U|470
8RDV|1|iN|G|471
8RDV|1|iN|U|472
8RDV|1|iN|A|473
8RDV|1|iN|A|474
8RDV|1|iN|A|475
8RDV|1|iN|G|476

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4