IL_8RDV_130

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*CAUUAG

Length

11 nucleotides

Bulged bases

8RDV|1|iN|U|528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_130 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0985

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RDV|1|iN|U|489
8RDV|1|iN|G|490
8RDV|1|iN|A|491
8RDV|1|iN|A|492
8RDV|1|iN|G|493
*
8RDV|1|iN|C|526
8RDV|1|iN|A|527
8RDV|1|iN|U|528
8RDV|1|iN|U|529
8RDV|1|iN|A|530
8RDV|1|iN|G|531

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4

Chain Pj

Small ribosomal subunit protein bS16