IL_8RDV_153

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8RDV|1|iN|U|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_153 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1251

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8RDV|1|iN|G|1092
8RDV|1|iN|U|1093
8RDV|1|iN|G|1094
*
8RDV|1|iN|C|1253
8RDV|1|iN|C|1254

Current chains

Chain iN

16S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain HK

Small ribosomal subunit protein uS14