IL_8RDV_157
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_157 not in the Motif Atlas
- Homologous match to IL_5J7L_050
- Geometric discrepancy: 0.0656
- The information below is about IL_5J7L_050
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
8RDV|1|iN|G|1105
8RDV|1|iN|U|1106
8RDV|1|iN|C|1107
*
8RDV|1|iN|G|1238
8RDV|1|iN|U|1239
8RDV|1|iN|C|1240
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain CT
- Small ribosomal subunit protein uS3
- Chain E5
- Small ribosomal subunit protein uS5
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
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