IL_8RDV_159
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_159 not in the Motif Atlas
- Homologous match to IL_5J7L_053
- Geometric discrepancy: 0.117
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8RDV|1|iN|C|1203
8RDV|1|iN|U|1204
8RDV|1|iN|G|1205
8RDV|1|iN|C|1206
*
8RDV|1|iN|G|1220
8RDV|1|iN|A|1221
8RDV|1|iN|G|1222
8RDV|1|iN|G|1223
8RDV|1|iN|A|1224
8RDV|1|iN|A|1225
8RDV|1|iN|G|1226
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain A4
- Small ribosomal subunit protein uS2
- Chain F
- Small ribosomal subunit protein uS9
- Chain GS
- Small ribosomal subunit protein uS7
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