IL_8RDV_166

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_166 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1217

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8RDV|1|iN|G|1450
8RDV|1|iN|U|1451
8RDV|1|iN|C|1452
*
8RDV|1|iN|G|1539
8RDV|1|iN|U|1540
8RDV|1|iN|C|1541

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Z2

Large subunit ribosomal RNA; LSU rRNA