IL_8RDV_171

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_171 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.5964

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8RDV|1|iN|U|1485
8RDV|1|iN|A|1486
8RDV|1|iN|G|1487
*
8RDV|1|iN|C|1505
8RDV|1|iN|G|1506

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Oi

Large ribosomal subunit protein bL19

Chain To

Small ribosomal subunit protein bS20

Chain Z2

Large subunit ribosomal RNA; LSU rRNA