IL_8RDW_006
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_006 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.0689
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8RDW|1|Z2|G|31
8RDW|1|Z2|U|32
8RDW|1|Z2|G|33
8RDW|1|Z2|G|34
8RDW|1|Z2|A|35
8RDW|1|Z2|U|36
8RDW|1|Z2|G|37
*
8RDW|1|Z2|C|493
8RDW|1|Z2|U|494
8RDW|1|Z2|G|495
8RDW|1|Z2|A|496
8RDW|1|Z2|A|497
8RDW|1|Z2|A|498
8RDW|1|Z2|C|499
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain PO
- Large ribosomal subunit protein bL20
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
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