IL_8RDW_018
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_018 not in the Motif Atlas
- Homologous match to IL_7RQB_016
- Geometric discrepancy: 0.103
- The information below is about IL_7RQB_016
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
8RDW|1|Z2|U|591
8RDW|1|Z2|U|592
8RDW|1|Z2|A|593
8RDW|1|Z2|A|594
8RDW|1|Z2|C|595
*
8RDW|1|Z2|G|603
8RDW|1|Z2|G|604
8RDW|1|Z2|G|605
8RDW|1|Z2|A|606
8RDW|1|Z2|G|607
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain dh
- Large ribosomal subunit protein bL35
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