IL_8RDW_020
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8RDW|1|Z2|G|786, 8RDW|1|Z2|G|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_020 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.1018
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RDW|1|Z2|G|659
8RDW|1|Z2|A|660
8RDW|1|Z2|A|661
8RDW|1|Z2|A|662
8RDW|1|Z2|C|663
*
8RDW|1|Z2|G|784
8RDW|1|Z2|U|785
8RDW|1|Z2|G|786
8RDW|1|Z2|A|787
8RDW|1|Z2|U|788
8RDW|1|Z2|A|789
8RDW|1|Z2|G|790
8RDW|1|Z2|C|791
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
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