IL_8RDW_030
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_030 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.0654
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RDW|1|Z2|G|841
8RDW|1|Z2|G|842
8RDW|1|Z2|G|843
8RDW|1|Z2|G|844
8RDW|1|Z2|U|845
8RDW|1|Z2|A|846
8RDW|1|Z2|G|847
*
8RDW|1|Z2|C|900
8RDW|1|Z2|G|901
8RDW|1|Z2|A|902
8RDW|1|Z2|A|903
8RDW|1|Z2|U|904
8RDW|1|Z2|A|905
8RDW|1|Z2|C|906
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain D8
- 5S ribosomal RNA; 5S rRNA
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain UC
- Large ribosomal subunit protein bL25
- Chain VH
- Large ribosomal subunit protein bL27
- Chain YW
- Large ribosomal subunit protein uL30
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