IL_8RDW_037

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCCCAAAU*AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_037 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0692

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8RDW|1|Z2|C|988
8RDW|1|Z2|C|989
8RDW|1|Z2|C|990
8RDW|1|Z2|C|991
8RDW|1|Z2|A|992
8RDW|1|Z2|A|993
8RDW|1|Z2|A|994
8RDW|1|Z2|U|995
*
8RDW|1|Z2|A|1135
8RDW|1|Z2|G|1136

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20