IL_8RDW_042
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_042 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1193
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8RDW|1|Z2|G|1022
8RDW|1|Z2|A|1023
8RDW|1|Z2|A|1024
8RDW|1|Z2|G|1025
*
8RDW|1|Z2|C|1098
8RDW|1|Z2|G|1099
8RDW|1|Z2|G|1100
8RDW|1|Z2|C|1101
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain GR
- Large ribosomal subunit protein uL6
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain UC
- Large ribosomal subunit protein bL25
- Chain ep
- Large ribosomal subunit protein bL36
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