IL_8RDW_052

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_052 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8RDW|1|Z2|C|1303
8RDW|1|Z2|C|1304
8RDW|1|Z2|A|1305
8RDW|1|Z2|A|1306
8RDW|1|Z2|C|1307
*
8RDW|1|Z2|G|1315
8RDW|1|Z2|G|1316
8RDW|1|Z2|G|1317

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain RF

Large ribosomal subunit protein uL22