IL_8RDW_053

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_053 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RDW|1|Z2|C|1335
8RDW|1|Z2|U|1336
8RDW|1|Z2|A|1337
8RDW|1|Z2|A|1338
8RDW|1|Z2|G|1339
*
8RDW|1|Z2|C|1360
8RDW|1|Z2|G|1361
8RDW|1|Z2|A|1362
8RDW|1|Z2|U|1363
8RDW|1|Z2|G|1364

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Cl

Large ribosomal subunit protein uL2