IL_8RDW_101
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CCUAGUAC*GGACCAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_101 not in the Motif Atlas
- Geometric match to IL_5TBW_377
- Geometric discrepancy: 0.2864
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8RDW|1|Z2|C|2634
8RDW|1|Z2|C|2635
8RDW|1|Z2|U|2636
8RDW|1|Z2|A|2637
8RDW|1|Z2|G|2638
8RDW|1|Z2|U|2639
8RDW|1|Z2|A|2640
8RDW|1|Z2|C|2641
*
8RDW|1|Z2|G|2646
8RDW|1|Z2|G|2647
8RDW|1|Z2|A|2648
8RDW|1|Z2|C|2649
8RDW|1|Z2|C|2650
8RDW|1|Z2|A|2651
8RDW|1|Z2|G|2652
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain GR
- Large ribosomal subunit protein uL6
- Chain H
- Elongation factor Tu
- Chain Je
- Large ribosomal subunit protein uL14
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