IL_8RDW_139

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_139 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.111

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.3

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

8RDW|1|iN|G|640
8RDW|1|iN|U|641
*
8RDW|1|iN|A|684
8RDW|1|iN|U|685
8RDW|1|iN|A|686
8RDW|1|iN|C|687

Current chains

Chain iN

16S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS8

Chain QZ

Small ribosomal subunit protein uS17