IL_8RDW_143
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GAGAG*UGGC
- Length
- 9 nucleotides
- Bulged bases
- 8RDW|1|iN|A|709
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_143 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0864
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8RDW|1|iN|G|706
8RDW|1|iN|A|707
8RDW|1|iN|G|708
8RDW|1|iN|A|709
8RDW|1|iN|G|710
*
8RDW|1|iN|U|784
8RDW|1|iN|G|785
8RDW|1|iN|G|786
8RDW|1|iN|C|787
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain FG
- Small ribosomal subunit protein bS6
- Chain NV
- Small ribosomal subunit protein bS21
- Chain OL
- Small ribosomal subunit protein uS15
- Chain R3
- Small ribosomal subunit protein bS18
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