IL_8RDW_148

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_148 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0631

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8RDW|1|iN|G|931
8RDW|1|iN|G|932
8RDW|1|iN|A|933
8RDW|1|iN|G|934
8RDW|1|iN|U|935
8RDW|1|iN|A|936
8RDW|1|iN|C|937
8RDW|1|iN|G|938
*
8RDW|1|iN|U|949
8RDW|1|iN|A|950
8RDW|1|iN|A|951
8RDW|1|iN|A|952
8RDW|1|iN|A|953
8RDW|1|iN|C|954

Current chains

Chain iN

16S rRNA

Nearby chains

Chain L6

Small ribosomal subunit protein uS12