IL_8RDW_165
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GCAG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8RDW|1|iN|A|1302, 8RDW|1|iN|A|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_165 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1769
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RDW|1|iN|G|1300
8RDW|1|iN|C|1301
8RDW|1|iN|A|1302
8RDW|1|iN|G|1303
*
8RDW|1|iN|C|1322
8RDW|1|iN|G|1323
8RDW|1|iN|A|1324
8RDW|1|iN|A|1325
8RDW|1|iN|U|1326
8RDW|1|iN|C|1327
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain CT
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
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