IL_8RDW_167

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_167 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1093

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RDW|1|iN|C|1348
8RDW|1|iN|G|1349
8RDW|1|iN|G|1350
8RDW|1|iN|A|1351
8RDW|1|iN|U|1352
8RDW|1|iN|U|1353
*
8RDW|1|iN|A|1374
8RDW|1|iN|U|1375
8RDW|1|iN|G|1376
8RDW|1|iN|A|1377
8RDW|1|iN|A|1378
8RDW|1|iN|G|1379

Current chains

Chain iN

16S rRNA

Nearby chains

Chain MM

Small ribosomal subunit protein uS13