IL_8RDW_168

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8RDW|1|iN|C|1445, 8RDW|1|iN|A|1548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_168 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0859

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8RDW|1|iN|C|1444
8RDW|1|iN|C|1445
8RDW|1|iN|G|1446
*
8RDW|1|iN|C|1546
8RDW|1|iN|A|1547
8RDW|1|iN|A|1548
8RDW|1|iN|G|1549

Current chains

Chain iN

16S rRNA

Nearby chains