IL_8RDW_178
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_178 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.0487
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
8RDW|1|Z2|G|1654
8RDW|1|Z2|G|1655
8RDW|1|Z2|A|1656
8RDW|1|Z2|A|1657
8RDW|1|Z2|C|1658
8RDW|1|Z2|U|1659
8RDW|1|Z2|A|1660
8RDW|1|Z2|G|1661
8RDW|1|Z2|G|1662
*
8RDW|1|Z2|C|1976
8RDW|1|Z2|U|1977
8RDW|1|Z2|G|1978
8RDW|1|Z2|U|1979
8RDW|1|Z2|C|1980
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain Je
- Large ribosomal subunit protein uL14
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