IL_8RG0_001

3D structure

PDB id

8RG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human eIF3 core from closed 48S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8RG0|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RG0_001 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2345

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8RG0|1|A|G|924
8RG0|1|A|G|925
8RG0|1|A|A|926
*
8RG0|1|A|U|1015
8RG0|1|A|U|1016
8RG0|1|A|U|1017
8RG0|1|A|U|1018

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain I

40S ribosomal protein S13