IL_8RJB_047

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_047 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.297

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RJB|1|K|G|1425
8RJB|1|K|G|1426
8RJB|1|K|A|1427
8RJB|1|K|U|1428
8RJB|1|K|C|1429
*
8RJB|1|K|G|1455
8RJB|1|K|C|1456
8RJB|1|K|G|1457
8RJB|1|K|C|1458
8RJB|1|K|A|1459
8RJB|1|K|C|1460

Current chains

Chain K

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L26

Chain b

60S ribosomal protein L29