IL_8RJB_056

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_056 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1226

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8RJB|1|K|C|1551
8RJB|1|K|G|1552
8RJB|1|K|A|1553
8RJB|1|K|A|1554
8RJB|1|K|G|1555
*
8RJB|1|K|U|1572
8RJB|1|K|G|1573
8RJB|1|K|G|1574
8RJB|1|K|A|1575
8RJB|1|K|G|1576

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain p

60S ribosomal protein L37a